Bioinformatics

concepts · 11 notes linked

Related: Github · Sequence Analysis · Drugbank · Drug Discovery · Network Analysis · Transcriptomics · David Haussler · Ucsc

Notes

• David Haussler - Wikipedia — Bioinformatician who led first human genome sequence assembly at UCSC
• Example script demonstrating the use of BioPython to compare genomic sequences at a given gene location. — BioPython script comparing sample sequences to reference genome for SNP detection
• GitHub - XinmengLiao/Open_MoA: Open MoA is a potent tool for identifying the underlying drug mechanism of actions (MoAs), core biological pathways, and key targets. — R tool predicting drug mechanism of action via network topology
• John Santerre — John Santerre academic publication record spanning ML, bioinformatics, and applied data science
• Make discoveries with your data — Bioinformatics blog covering genomics data analysis with Python and CLI tools
• NBEAM: How I Wrote an Ultra-Fast DNA Sequence Alignment Algorithm in JavaScript — Bitwise-optimized ungapped degenerate DNA sequence alignment in JavaScript
• Open source software for Bioinformatics — Bioconductor open-source R platform for bioinformatics analysis
• Position weight matrix - Wikipedia — Matrix representation of biological sequence motifs using position-specific log-odds scores
• Reverse Complement — Web tool converting DNA sequences to reverse complement
• When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes — Alignment-free k-mer SNP discovery tool for hundreds of microbial genomes
• dnaa — Command-line DNA analysis tool for post-alignment whole genome resequencing